CHUBU UNIVERSITY
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KOJIMA Shoko

Profile

Title Associate Professor
Belong to Dept. of Environmental Biology
Bioscience and Biotechnology (graduate school)
Graduated Nagoya University, Graduate School of Science
Academic Institutional Membership The Molecular Biology Society of Japan
Field of Study Plant Molecular Biology
Research, Studies Molecular Mechanisms of Development and Differentiation in plant
Curriculum Specialized Molecular Biology, Genetic Engineering

Books Published, Translation

Machida C., Iwakawa, H., Ueno, Y., Semiarti, E., Tsukaya, H., Hasebe, M. Kojima, S. and Machida, Y. "Morphogenesis and Pattern Formation in Biological Systems - Experiments and Models -" edited by T. Sekimura, S. Noji, N. Ueno, and P.K. Maini. Published by Springer-Verlag Tokyo, pp177-187, 2003

Academic Papers, Critique

Iwasaki M., Takahashi H., Iwakawa H., Nakagawa A., Ishikawa T., Tanaka h., Matsumura Y., Pekker I., Eshed Y., Vial-Pradel S., Ito T., Watanabe Y., Ueno Y., Fukazawa H., Kojima S., Machida Y. and Machida C.: Dual regulation of ETTIN (ARF3) gene expression by AS1-AS2, which maintains the DNA methylation level, is involved in stabilization of leaf adaxial-abaxial partitioning in Arabidopsis. Development 140, 1958-1969 (2013)

Takahashi H., Iwakawa H., Ishibashi N., Iwasaki, M., Kojima S., Matsumura Y., Prananingrum P., Takahashi A., Ikezaki M., Luo, L., Kobayashi T., Machida Y. and Machida C. Meta-analyses of microarrays of Arabidopsis asymmetric leaves2 (as2) and as1 mutants reveal a critical role of the ETT pathway in stabilization of adaxial-abaxial patterning and cell division during leaf development. Plant Cell Physiol 54(3), 418-431 (2013)

Takahashi H., Nakagawa A., Kojima S., Takahashi A., Cha B. Y., Woo J., Nagai K., Machida Y. and Machida C.: Discovery of novel rules for G-quadruplex-forming sequences in plants by using bioinformatics methods J. Bioscience and Bioengineering 114, 570-575 (2012)

Nakagawa A., Takahashi H., Kojima S., Sato N., Ohga K., Cha B. Y., Woo J., Nagai K., Horiguchi G., Tsukaya H., Machida Y. and Machida C.: Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana. Plant Molecular Biology 79, 569-581 (2012)

Keta S., Iwakawa I., Ikezaki M.,Semiarti E., Kojima S., Machida Y. and Machida C.: Roles of the ASYMMETRIC LEAVES2 gene in floral organ development in Arabidopsis thalianav. Plant Biotechnology 29, 1-8 (2012)

Ishibashi N., Kanamaru K., Ueno Y., Kojima S., Kobayashi T., Machida C. and Machida Y.: ASYMMETRIC-LEAVES2 and an ortholog of eukaryotic NudC domain proteins repress expression of AUXIN-RESPONSE-FACTOR and class 1 KNOX homeobox genes for development of flat symmetric leaves in Arabidopsis Biology Open 1, 197-207 (2012)

Kojima S., Iwasaki, M., Takahashi H., Imai, T., Matsumura, Y., Fleury D., Van Lijsebettens, M., Machida Y. and Machida C.: ASYMMETRIC LEAVES2 and Elongator, a Histone Acetyltransferase Complex, Mediate the Establishment of Polarity in Leaves of Arabidopsis thaliana Plant Cell Physiol. 52(8), 1259-1273 (2011)

Ikezaki M., Kojima M., Sakakibara H., Kojima S., Ueno Y., Machida C., Machida Y.: Genetic networks regulated by ASYMMETRIC LEAVES1 (AS1) and AS2 in leaf development in Arabidopsis thaliana: KNOX genes control five morphological events. Plant J. 61, 70-82 (2010)

Iwakawa H., Iwasaki M., Kojima S., UenoY., Soma T., Tanaka H., Semiarti E., Machida Y. and Machida C.: Expression of the ASYMMETRIC LEAVES2 gene in the adaxial domain of Arabidopsis leaves represses cell proliferation in this domain and is critical for the development of properly expanded leaves. Plant J. 51, 173-184 (2007)

Iwakawa H., Ueno Y, Semiarti E., Onouchi H., Kojima S., Tsukaya H., Hasebe Y., Soma T., Ikezaki M., Machida C., and Machida Y.: The ASYMMETRIC LEAVES2 gene of Arabidopsis thaliana, required for formation of a symmetric flat leaf lamina, encodes a member of a novel family of proteins characterized by cysteine repeats and a leucine zipper. Plant and Cell Physiology 43, 467-478 (2002)

Kojima S., Takahashi, Y., Kobayashi, Y., Monna, L., Sasaki, T., Araki, T. and Yano, M.: Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hd1 under short-day conditions. Plant Cell Physiol. 43, 1096-1105 (2002)

Monna L., Lin H. X., Kojima S., Sasaki T. and Yano M.: Genetic dissection of genomic region for a quantitative trait locus, Hd3 into two loci, Hd3a and Hd3b , controlling heading date in Rice. Theor. Appl. Genet. 104, 772-778 (2002)

Yano M., Kojima S., Takahashi Y. and Lin H. X.: Genetic control of flowering in rice, a short-day plant. Plant Physiol. 127, 1425-1429 (2001)

Kojima S., Banno H., Yoshioka Y., Oka A., Machida C., and Machida Y.: A binary vector plasmid for gene expression in plant cells that is stably maintained in agrobacterium cells. DNA research 6, 407-410 (1999)

Shinozuka Y, Kojima S., Shomura A., Ichimura H., Yano M., Yamamoto K. and Sasaki T.: Isolation and characterization of rice MADS box gene homologues and their RFLP mapping. DNA Res. 6, 123-129 (1999)

Yoshioka Y., Matsumoto S., Kojima S., Ohshima K., Okada N. and Machida, Y.: Molecular characterization of a short interspersed repetitive element (SINE) from tobacco that exhibits sequence homology to specific tRNAs. Proc. Natl. Acad. Sci. USA. 90, 6562-6566 (1993)

Lectures, Symposium, Presentation

Semiarti, E., Indrianto, A., Purwantoro, A., Isminingsih, S., Suseno, N., Machida, Y., Kojima, S. and Machida, C.: Development of methods for Agrobacterium-mediated transformation of the wild orchid species Phalaenopsis amabilis and its application. Nagoya International Orchid Congress, 2009

Iwasaki, M., Kojima, S., Matsumura, Y., Ueno, Y., Machida, Y. and Machida, C. 2008. A genetic screen for genes interacting with AS2 during leaf development. 19th International Conference on Arabidopsis Reseach, at Montreal, Canada

Iwakawa H., Iwasaki M., Kojima S., Takahashi H., Kobayashi T., Machida Y. and Machida C., The ASYMMETRIC LEAVES2 gene regulates adaxial cell proliferation involved in the development of symmetric and flat leaf laminae. 18th International Conference on Arabidopsis Reseach, June, 2007 (Beijing, CHN).

Iwasaki M., Iwakawa H., Ueno Y., Takahashi H., Kojima S., Kobayashi T., Machida Y. and Machida C. The ASYMMETRIC LEAVES2 regulates leaf polarity by repressing ETTIN in Arabidopsis. 18th International Conference on Arabidopsis Reseach, June, 2007 (Beijing, CHN).

Kojima S., Matsumura Y.,Ueno Y., Machida Y. and Machida C.: A genetic screen for new factors involved in ASYMMETRIC LEAVES2-mediated leaf developmental pathway. The 20th IUBMB Congress and 11th FAOBMB Congress, June , 2006 (Kyoto, Japan).

Kojima S., Iwakawa H., Ueno Y., Semiarti E., Soma T., Kuzumaki A.,Tsukaya H., Machida C. and Machida Y. : Function of the ASYMMETRIC LEAVES1 and ASYMMETRIC LEAVES2 genes in leaf development of Arabidopsis. International symposium on PLANT AXIS FORMATION AND SIGNAL TRANSDUCTION, March, 2005 (Tokyo , Japan).

Kojima S., Ueno Y., Iwakawa H., Semiarti E., Soma T., Tsukaya H., Ishikawa T., Machida Y. and Machida C.: "The ASYMMETRIC LEAVES2 is involved in the formation of a flat leaf lamina in the presence of the ASYMMETRIC LEAVES1 gene", 16th International Conference on Arabidopsis Reseach, Univ. of Wisconsin, June 2005 (Madison, USA)

Map-based Cloning of the Rice Photoperiod Sensitivity QTL, Hd3a, Plant and Animal Genome IX Conference, 2001

Map-based Cloning of the Rice Photoperiod Sensitivity Gene, Hd3a, the 23rd Annual Meeting of the Molecular Biology Society of Japan, 2000

Fine Scale Genetic and Physical Mapping of a Rice Photoperiod Sensitivity Gene, Hd3., Plant and Animal Genome VII Conference, 1999

Fine-scale Genetic Linkage Map and Physical Mapping of a Rice Photoperiod Sensitivity Gene, Hd3, the 94th Semiannual Meeting of Japanese Society of Breeding, 1998

Cataloguing of Rice cDNA Clones, 50th SEB Symposium-Unifying Plant Genomes, 1995

Awards

The 80th Annual Meeting of Genetics Society of Japan Best Paper Award 2008 Machida C., Iwakawa H., Takahashi H., Mazet Rémi, Iwasaki M., Kojima S., Kobayashi T. and Machida Y. : Analysis of genetic network of gene regulation mediated by AS2 and AS1 in the leaf development in Arabidopsis thaliana September 2009 (Nagoya)

Nagoya International Orchid Congress(NIOC) Encouragement Award 2009, Semiarti, E., Indrianto, A., Purwantoro, A., Isminingsih, S., Suseno, N., Machida, Y., Kojima, S. and Machida, C.:Development of methods for Agrobacterium-mediated transformation of the wild orchid species Phalaenopsis amabilis and its application. Nagoya International Orchid Congress 2009 (Nagoya)

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